2016-- 微生物资源前期开发国家重点实验室

学术论文

2016

	2016发表文章目录
1.	Wang R, Li M, Gong L, Hu S, Xiang H*. 2016. DNA motifs determining the accuracy of repeat duplication during CRISPR adaptation in Haloarcula hispanica. Nucleic Acids Res, 44(9): 4266-77.
2.	Liu X, Wu L, Hou J, Chen J, Han J, Xiang H*. 2016. Environmental biodegradation of haloarchaea-produced poly(3-hydroxybutyrate-co-3-hydroxyvalerate) in activated sludge. Appl Microbiol Biotechnol, 100(15): 6893-902.
3.	Liu G, Cai S, Hou J, Zhao D, Han J, Zhou J, Xiang H*. 2016. Enoyl-CoA hydratase mediates polyhydroxyalkanoate mobilization in Haloferax mediterranei. Sci Rep, 6: 24015
4.	Chen S, Liu HC, Zhou J, Xiang H*. 2016. Halorubrum pallidum sp. nov., an extremely halophilic archaeon isolated from a subterranean rock salt. Int J Syst Evol Microbiol. 66(8): 2980-6.
5.	Chen S, Liu HC, Zhou J, Xiang H*. 2016. Haloparvum sedimenti gen. nov., sp. nov., a new member of the family Haloferacaceae. Int J Syst Evol Microbiol. 66(6): 2327-34
6.	Borjian F, Han J, Hou J, Xiang H*, Berg IA. 2016. The methylaspartate cycle in haloarchaea and its possible role in carbon metabolism. ISME J, 10(3): 546-57 .
7.	Chen S, Wang C, Xiang H*. 2016. Sequence analysis and minimal replicon determination of a new haloarchaeal plasmid pHF2 isolated from Haloferax sp. strain Q22. Plasmid, 83:1-7.
8.	Chen P, Zhang L, Guo X, Dai X, Liu L, Xi L, Wang J, Song L, Wang Y, Zhu Y, Huang L, Huang Y*. Diversity, biogeography, and biodegradation potential of actinobacteria in the deep-sea sediments along the Southwest Indian Ridge. Front Microbiol, 2016, 7: 1340.
9.	Cheng K, Rong X, Huang Y. Widespread interspecies homologous recombination reveals reticulate evolution within the genus Streptomyces. Mol Phylogenet Evol, 2016, 102: 246-254.
10.	Liu M, Liu N, Shang F, Huang Y*. Activation and identification of NC-1, a cryptic cyclodepsipeptide from red soil-derived Streptomyces sp. FXJ1.172. Eur J Org Chem, 2016, 23: 3943-3948.
11.	Lü Y, Yue C, Shao M, Qian S, Liu N, Bao Y, Wang M, Liu M, Li X, Wang Y, Huang Y. Molecular genetic characterization of an anthrabenzoxocinones gene cluster in Streptomyces sp. FJS31-2 for the biosynthesis of BE-24566B and zunyimycin A. Molecules, 2016, 21: 711
12.	Wang Y, Wang J, Yu S, Wang F, Ma H, Yue C, Liu M, Deng Z, Huang Y* Qu X*. Identifying the minimal enzymes for unusual carbon-sulfur bonds formation in the thienodolin biosynthesis. ChemBioChem, 2016, 17: 799-803.
13.	Yue C, Niu J, Liu N, Lü Y, Liu M, Li Y, Wang M, Shao M, Qian S, Bao Y, Huang Y*. Cloning and identification of the lobophorin biosynthetic gene cluster from marine Streptomyces olivaceus strain FXJ7.023. Pak J Pharm Sci, 2016, 29: 287-293.
14.	Labeda DP*, Rong X, Huang Y, Doroghazi JR, Ju K-S, Metcalf WW.2016. Taxonomic evaluation of species in the Streptomyces hirsutus clade using multi-locus sequence analysis and proposals to reclassify several species in this clade. IJSEM，66: 2444-2450.
15.	Cao C, Jiang J, Sun H, Huang Y, Tao F, Lian B*. 2016. Carbonate mineral formation under the influence of limestone-colonizing actinobacteria: morphology and polymorphism. Front Microbiol，2016, 7: 366.
16.	Li Yue, Li Jingjing, Tian Zhenhua, Xu Yu, Zhang Jihui, Liu Wen and Tan Huarong*. 2016. Coordinative modulation of chlorothricin biosynthesis by binding of the intermediates and end product to a response regulator ChlF1. J Biol Chem., 291(10): 5406-5417.
17.	Niu Guoqing, Keith F Chater, Tian Yuqing, Zhang Jihui and Tan Huarong*. 2016. Specialised metabolites regulating antibiotic biosynthesis in Streptomyces spp. FEMS MIcrobiol Rev. 40(4): 554-573.
18.	Chu Y#, Zhu Y#, Chen Y, Li W, Zhang Z, Liu D, Wang T, Ma J, Deng H, Liu ZJ, Ouyang S, Huang L. 2016. aKMT Catalyzes Extensive Protein Lysine Methylation in the Hyperthermophilic Archaeon Sulfolobus islandicus but is Dispensable for the Growth of the Organism. Mol Cell Proteomics. 15(9):2908-23.
19.	Dai X, Wang H, Zhang Z, Li K, Zhang X, Mora-López M, Jiang C, Liu C, Wang L, Zhu Y, Hernández-Ascencio W, Dong Z, Huang L*. 2016. Genome Sequencing of Sulfolobus sp. A20 from Costa Rica and Comparative Analyses of the Putative Pathways of Carbon, Nitrogen, and Sulfur Metabolism in Various Sulfolobus Strains. 2016. Front Microbiol. 7:1902.
20.	Sun F, Huang L*. 2016. A euryarchaeal histone modulates strand displacement synthesis by replicative DNA polymerases. Sci China Life Sci. 59(7):709-16.
21.	Zhao, J. K., X. M. Li, G. M. Ai, Y. Deng, S. J. Liu, and C. Y. Jiang. 2016. Reconstruction of metabolic networks in a fluoranthene-degrading enrichments from polycyclic aromatic hydrocarbon polluted soil. J. Hazard. Mater. 318:90-98.
22.	Huang, Z., B. Ni, C. Y. Jiang, Y. F. Wu, Y. Z. He, R. E. Parales, and S. J. Liu. 2016. Direct sensing and signal transduction during bacterial chemotaxis toward aromatic compounds in Comamonas testosteroni. Mol. Microbiol. 101:224-237.
23.	Jiang, C. Y., L. B. Dong, J. K. Zhao, X. F. Hu, C. H. Shen, Y. X. Qiao, X. Y. Zhang, Y. P. Wang, R. F. Ismagilov, S. J. Liu, and W. B. Du. 2016. High-Throughput Single-Cell Cultivation on Microfluidic Streak Plates. Appl. Environ. Microbiol. 82:2210-2218.
24.	Du, L., L. Ma, F. F. Qi, X. L. Zheng, C. Y. Jiang, A. L. Li, X. B. Wan, S. J. Liu*, and S. Y. Li. 2016. Characterization of a Unique Pathway for 4-Cresol Catabolism Initiated by Phosphorylation in Corynebacterium glutamicum. J. Biol. Chem. 291:6583-6594.
25.	Shen, Q. X., J. Gao, J. Liu, S. J. Liu, Z. J. Liu, Y. H. Wang, B. Y. Guo, X. L. Zhuang, and G. Q. Zhuang. 2016. A New Acyl-homoserine Lactone Molecule Generated by Nitrobacter winogradskyi. Scientific reports 6.
26.	Weishan Wang#, Tongjian Yang#, Yihong Li, Shanshan Li, Shouliang Yin, Kathryn Styles, Christophe Corre, and Keqian Yang*. Development of a Synthetic Oxytetracycline-Inducible Expression System for Streptomycetes Using de Novo Characterized Genetic Parts. ACS Synth. Biol. 2016, 5(7): 765–73.
27.	Tianyu Jiang#, Bowen Ke#, Hui Chen, Weishan Wang, Lupei Du, Keqian Yang, and Minyong Li. Bioluminescent Probe for Detecting Mercury(II) in Living Mice. Anal. Chem. 2016, 88(15): 7462–65.
28.	John D. Sidda, Vincent Poon, Lijiang Song, Weishan Wang, Keqian Yang, and Christophe Corre. Overproduction and Identification of Butyrolactones SCB1-8 in the Antibiotic Production Superhost Streptomyces M1152. Org. Biomol. Chem. 2016, 14(27): 6390-93.
29.	Shouliang Yin#, Zilong Li#, Xuefeng Wang, Huizhuan Wang, Xiaole Jia, Guomin Ai, Zishang Bai, Mingxin Shi, Fang Yuan, Tiejun Liu, Weishan Wang, Keqian Yang. Heterologous Expression of Oxytetracycline Biosynthetic Gene Cluster in Streptomyces Venezuelae WVR2006 to Improve Production Level and to Alter Fermentation Process. Appl. Microbiol. Biotechnol., 2016, 100(24): 10563-72.
30.	Tianyu Jiang, Weishan Wang, Xingkang Wu, Wenxiao Wu, Haixiu Bai, Zhao Ma, Yuemao Shen, Keqian Yang, and Minyong Li*. Discovery of New Substrates for LuxAB Bacterial Bioluminescence. Chem. Biol. Drug Design 2006, 88(2): 197–208.
31.	Zilong Li, Ning Jiang, Keqian Yang, and Jianting Zheng. Cloning, Expression, and Characterization of a Thermostable Glucose-6-Phosphate Dehydrogenase from Thermoanaerobacter Tengcongensis. Extremophiles？ 2006, 20(2): 149-56.
32.	Nilnate Assavasirijinda, Deyong Ge, Bo Yu, Yanfen Xue, and Yanhe Ma*.(2016) Efficient fermentative production of polymer-grade D-lactate by an engineered alkaliphilic Bacillus sp. strain under non-sterile conditions, Microb Cell Fact 15: 3.
33.	Yajian Song, Jinshan Li, Shan Meng, Liang Yin, Yanfen Xue, Yanhe Ma*.(2016) A Novel Manno-Oligosaccharide Binding Protein Identified in Alkaliphilic Bacillus sp. N16-5 Is Involved in Mannan Utilization, PLoS ONE 11(3): e0150059.
34.	Deyong Ge, Yanfen Xue, and Yanhe Ma*.(2016) Two unexpected promiscuous activities of the iron–sulfur protein IspH in production of isoprene and isoamylene, Microb Cell Fact 15: 79.
35.	Liwei Liu, Tingting Hao, Zhoujie Xie, Geoff P. Horsman and Yihua Chen* (2016) Genome mining unveils widespread natural product biosynthetic capacity in human oral microbe Streptococcus mutans. Sci. Rep. 6:37479.
36.	Jine Li，Min Wang，Yong Ding, Yue Tang, Zhiguo Zhang and Yihua Chen* (2016) Involvement of an octose ketoreductase and two acyltransferases in the biosynthesis of paulomycins. Sci. Rep. 6:21180.
37.	Jun Tian, Haiyan Chen, Zhengyan Guo, Ning Liu, Jine Li, Ying Huang, Wensheng Xiang and Yihua Chen* (2016) Discovery of pentangular polyphenols hexaricins A-C from marine Streptosporangium sp. CGMCC 4.7309 by genome mining. Appl. Microbiol. Biotechnol. 100(9):4189-4199.
38.	Wang J, Ge X, Zhang L, Teng K, Zhong J*. One-pot synthesis of class II lanthipeptide bovicin HJ50 via an engineered lanthipeptide synthetase. Scientific Reports. 2016 Dec 7;6:38630.
39.	Ge X, Teng K, Wang J, Zhao F, Wang F, Zhang J, Zhong J. Ligand determinants of nisin for its induction activity. Journal of Dairy Science. 2016 Jul; 99(7):5022-31.
40.	Guo Y, Huang E, Yang X, Zhang L, Yousef A, Zhong J*. Isolation and characterization of a Bacillus atrophaeus strain and its potential use in food preservation. Food control. 2016, 60: 511-518.
41.	Liang W, Guan G, Dai Y, Cao C, Tao L, Du H, Nobile CJ, Zhong J, Huang G*. 2016. Lactic acid bacteria differentially regulate filamentation in two heritable cell types of the human fungal pathogen Candida albicans. Molecular Microbiology，102(3):506-519.
42.	Zhi-Ping Zhong, Ying Liu, Fang Wang, Yu-Guang Zhou, Hong-Can Liu, Zhi-Pei Liu*. 2016. Lacimicrobium alkaliphilum gen. nov., sp. nov., a member of the family Alteromonadaceae isolated from a salt lake. Int J Syst Evol Microbiol, 66(1): 422-429
43.	Zhi-Ping Zhong; Ying Liu; Fang Wang; Yu-Guang Zhou; Hong-Can Liu; Zhi-Pei Liu*. 2016. Psychroflexus salis sp. nov. and Psychroflexus planctonicus sp. nov., isolated from a salt lake. Int J Syst Evol Microbiol, 66(1): 125-131
44.	Zhi-Ping Zhong, Ying Liu, Fang Wang, Yu-Guang Zhou, Hong-Can Liu, Qing Liu, Zhi-Pei Liu*. 2016. Planktosalinus lacus gen. nov., sp. nov., a member of the family Flavobacteriaceae isolated from a salt lake. Int J Syst Evol Microbiol, 66(5): 2084-2089
45.	Zhi-Ping Zhong, Ying Liu, Fang Wang, Yu-Guang Zhou, Hong-Can Liu and Zhi-Pei Liu*. Aquisalinus flavus gen. nov., sp. nov., a new member of the family Parvularculaceae isolated from a saline lake. Int J Syst Evol Microbiol, 66(4): 1813-1817
46.	Li-Li MIAO1, Yan-Jie HOU？1, Hong-Xia FAN, Jie QU, Chao QI？, Ying LIU, De-Feng LI？2 and Zhi-Pei LIU*. 2016. Molecular structural basis for the cold-adaptedness of psychrophilic β-glucosidase BglU in Micrococcus antarcticus. Appl Environ Microbiol, 82(7): 2021-2030.
47.	Zhi-Ping Zhong, Ying Liu, Li-Li Miao, Fang Wang, Li-Min Chu, Jia-Li Wang and Zhi-Pei Liu*. 2016. Prokaryotic community structure driven by salinity and ionic concentrations in plateau lakes of the Tibetan plateau. Appl Environ Microbiol, 82(6): 1846-1858.
48.	Ying Liu, Guo-Min Ai, Li-Li Miao, Zhi-Pei Liu*. 2016. Marinobacter strain NNA5, a newly isolated and highly efficient aerobic denitrifier with zero N2O emission. Bioresour Technol, 206: 9-15.
49.	Lili Miao, Zhipei Liu*.2016. Specific amino acids responsible for the cold adaptedness of Micrococcus antarcticus beta-glucosidase BglU，Appl Microbiol Biotechnol，1-9.
50.	Weili Du Zhipei Liu*. 2016. Association of running manner with bacterial community dynamics in a partial short-term nitrifying bioreactor for treatment of piggery wastewater with high ammonia content. AMB Express，6,76.
51.	Dong L.B.，Chen，D.W，Liu S.J.，Du W.B.* 2016. Automated Chemotactic Sorting and Single-cell Cultivation of Microbes using Droplet Microfluidics, Scientific Reports, 6, 24192.
52.	Liao S.L.， He Y.L.， Wang D.G.，Dong L.B.， Du, W.B., Wang, Y.P. 2016. Dynamic Interfacial Printing for Monodisperse Droplets and Polymeric Microparticles, Advanced Materials Technologies, 1, 1600021.
53.	Xu P., Zheng X., Tao Y., Du W.B.* (2016) Cross-Interface Emulsification for Generating Size-Tuneable Droplets, Analytical Chemistry, 88(6), 3171-3177.
54.	Jiang C.-Y. , Dong L.B, Zhao J.-K., Hu X.F., Shen C.H., Qiao Y.X., Zhang X.Y., Wang Y.P., Ismagilov, R.F.; Liu, S.-J.; Du, W.B. (2016) High throughput Single-cell Cultivation on Microfluidic Streak Plates, Applied Environmental Microbiology, 82 (7), 2210-2218.
55.	Zhan Z*., Xu X., Fu Y.V. 2016. Single cell tells the developmental story. Science Bulletin 61, 1355-1357
56.	Yu S., Wei Q., Zhao T., Guo Y., and Ma, L.Z*. 2016. A survival strategy for Pseudomonas aeruginosa that uses exopolysaccharides to sequester and store iron to stimulate Psl-dependent biofilm formation. Appl Environ Microbiol 82: 6403-6413.
57.	Zhu B., Liu C., Liu S., Cong H., Chen Y., Gu L., and Ma, L.Z*. 2016. Membrane association of SadC enhances its diguanylate cyclase activity to control exopolysaccharides synthesis and biofilm formation in Pseudomonas aeruginosa. Environ Microbiol 18: 3440-3452.
58.	Ai-Hua Li, Hong-Can Liu, Wei-Guo Hou, Yu-Guang Zhou* 2016. Pseudorhodobacter sinensis sp. nov. and Pseudorhodobacter aquaticus sp. nov. , isolated from crater lakes . Int J Syst Evol Microbiol 66: 2819-2824.
59.	Wu L, Sun Q, Desmeth P, Sugawara H, Xu Z, McCluskey K, Smith D, Alexander V, Lima N, Ohkuma M, Robert V, Zhou Y, Li J, Fan G, Ingsriswang S, Ozerskaya S, Ma J*. 2016. World data centre for microorganisms: an information infrastructure to explore and utilize preserved microbial strains worldwide. Nucleic Acids Research. 4;45(D1):611-618.
60.	Leclercq Sebastien Olivier, Wang Chao, Sui Zhihai, Wu Hai, Zhu Baoli, Deng Ye, Feng Jie*. 2016. A multi-player game: Clostridium, Acinetobacter, and Pseudomonas species drive the antibiotic-resistance gene persistence in manured soils. Environ Microbiol. 18(10):3494-3508.
61.	Leclercq Sébastien Olivier, Wang Chao, Zhu Yaxin, Wu Hai, Du Xiaochen, Liu Zhipei, Feng Jie*. 2016. Diversity of the Tetracycline Mobilome Within a Chinese Pig Manure Sample. Appl Environ Microbiol. 82(21):6454-6462.
62.	Zhang Gang, Tian Jingjing, Wang Chao, Chen Jifeng, Feng Jie*. 2016. Identification of novel cryptic aminoglycoside phosphotransferases in Pseudomonas aeruginosa. Antimicrob Agents Chemother. 60(11):6983-6985.
63.	Xiaodan Yan，Jianjun Wang, Yu Sun, Junge Zhu, Sheng Wu* 2016. Facilitating the evolution of esterase activity from a promiscuous enzyme (Mhg) with catalytic functions of amide hydrolysis and carboxylic acid perhydrolysis by engineering the substrate entrance tunnel. Appl Environ Microbiol. 82: 6748-6756.
64.	Yu, Q., Cai, H., Zhang, Y., He, Y., Chen, L., Merritt, J., Zhang, S., and Dong, Z.* 2016. Negative Regulation of Ectoine Uptake and Catabolism in Sinorhizobium meliloti: Characterization of the EhuR Gene. Journal of Bacteriology ,13:199(1).